PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DL_BCD584BC0.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 777aa    MW: 88394.6 Da    PI: 7.1407
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DL_BCD584BC0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.59.3e-181195191
                   FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                           +fY++YA ++GF v+++ks+ + + g + +  +vC+++g+ +e+        + r++ +t+C+a+++ +++ dg  ++t+++l+HnH+l+
  Traes_5DL_BCD584BC0.2 11 NFYKRYALRTGFGVCVKKSSFT-KAGLCRRLLLVCNRWGNGKEDACY-----QARPTAKTNCQATVVARLWGDGMLHLTDVSLDHNHPLN 94
                           6*****************9998.6777****************9999.....999*********************************97 PP

                   FAR1 91 p 91
                           p
  Traes_5DL_BCD584BC0.2 95 P 95
                           5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.9E-161195IPR004330FAR1 DNA binding domain
PfamPF105516.7E-26200292IPR018289MULE transposase domain
PROSITE profilePS509669.371479515IPR007527Zinc finger, SWIM-type
SMARTSM005750.0041490517IPR006564Zinc finger, PMZ-type
PfamPF044345.0E-5492511IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 777 aa     Download sequence    Send to blast
MVFKSYEEVL NFYKRYALRT GFGVCVKKSS FTKAGLCRRL LLVCNRWGNG KEDACYQARP  60
TAKTNCQATV VARLWGDGML HLTDVSLDHN HPLNPSAARF LRCYKTLPSG MSKDLVVRAA  120
RGECATSGGD VEAPPMFDDW GRLKIREGDV QAINCFFAEM QAKQPNFFYV MDFYVEGHLR  180
SVLWADSRSR EAYQYFSDAI WVDTTCLRSK FNVPLVLFLG VNHHGQLVLL GCGLLSDEST  240
ESFLWLFKAW LTCMKGRLPG AMITDESVAI KAAVREVFPK TRHRISDWHI VRSIAEKLGE  300
LPEYESIKVQ MEAVIYGSLK DDQFETRWKN LINRFGLQDN EWIIFLYENR HLWVPSFLKD  360
AFWAGLSVNH RESPGAFFDG SVSHETTLVS FLSNYMILVQ YKYKMEQQDD FESLTSGRVL  420
VSKFPMEEQI SKLYTLNMFV KFQDELKSTL DCQVQQVSPS SFVVIDLAEQ GTGLVTRKYE  480
VVHCMETNRM ECNCGLFQFS GIVCRHALSV LKWQQVYDIP PCYVLNRWRS DFKQLHALDN  540
PLKDPLVSSN HVERYDHISL QCLRLVEIGM VSDDKYQHAL KLISDMKRTL LDDNLCRELE  600
QKMSPPERAI VVNGDSHAQP GSSEGGPAKK RRGRPPKKSK EISAESVSNQ CGNKESLLVS  660
SDVSQKGALH SSSTASNLGT HVRAHGVDDL MEEVNANEVS FESRYGVQSS HPNHYGDQLH  720
PGHTLQFGQH ISAEQSRGVE WVYPTIYQVP DDEMYRGVRE AASWRRPPPQ DVLASSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559160.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_010235331.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 6-like
TrEMBLW5FY580.0W5FY58_WHEAT; Uncharacterized protein
STRINGMLOC_4235.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-117FAR1-related sequence 6
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]